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Tracing Failing MPI Applications
Normally, if an MPI application fails or is aborted, all the trace data collected is lost, because libVT needs a working MPI to write the trace file. However, the user might want to use the data collected up to that point. To solve this problem, Intel® Trace Collector provides the libVTfs library that enables tracing of failing MPI applications.
To trace failing MPI applications, do the following:
Set the LD_PRELOAD environment variable to point to the libVTfs library and run the application. For example:
$ export LD_PRELOAD=libVTfs.so $ mpirun -n 4 ./myApp
Alternatively, rebuild your application with the static version of the library. For example:
$ mpiicc -profile=vtfs myApp.c -o myApp
Relink your application with the libVTfs library before the Intel MPI Library and run it as usual. To do this, you should create an Intel® MPI Library configuration file that points to the libVTfs library. You can do it as follows (administrator privileges may be required):
> echo SET PROFILE_PRELIB=%VT_ROOT%\lib\VTfs.lib > %I_MPI_ROOT%\lib\VTfs.conf > mpiicc -profile=VTfs myApp.c > mpiexec -n 4 myApp.exe
How it Works
Under normal circumstances tracing works like with libVT, but communication during trace file writing is done through TCP sockets, so it may take more time than over MPI. In order to establish communication, it needs to know the IP addresses of all the hosts involved. It finds them by looking up the hostname locally on each machine or, if that only yields the 127.0.0.1 local host IP address, falls back to broadcasting hostnames. In the latter case hostname lookup must work consistently in the cluster. In case of a failure, libVTfs freezes all MPI processes and then writes a trace file with all trace data.
Includes events inside the application like segmentation faults and floating point errors, and also abort signals sent from outside, like SIGINT or SIGTERM.
Only SIGKILL will abort the application without writing a trace because it cannot be caught.
|Premature Exit||One or more processes exit without calling MPI_Finalize().|
|MPI Errors||MPI detects certain errors itself, like communication problems or invalid parameters for MPI functions.|
If Intel® Trace Collector observes no progress for a certain amount of time in any process, it assumes that a deadlock has occurred, stops the application and writes a trace file.
You can configure the timeout with DEADLOCK-TIMEOUT. "No progress" is defined as "inside the same MPI call". This is only a heuristic and may fail to lead to both false positives and false negatives.
If the application polls for a message that cannot arrive with MPI_Test() or a similar non-blocking function, Intel® Trace Collector still assumes that progress is made and does not stop the application.
To avoid this, use blocking MPI calls in the application, which is also better for performance.
If all processes remain in MPI for a long time due to a long data transfer for instance, then the timeout might be reached. Because the default timeout is five minutes, this is very unlikely. After writing the trace libVTfs will try to clean up the MPI application run by sending all processes in the same process group an INT signal. This is necessary because certain versions of MPICH* may have spawned child processes which keep running when an application aborts prematurely, but there is a certain risk that the invoking shell also receives this signal and also terminates. If that happens, then it helps to invoke mpirun inside a remote shell:
rsh localhost 'sh -c "mpirun . . . "'
MPI errors cannot be ignored by installing an error handler. libVTfs overrides all requests to install one and uses its own handler instead. This handler stops the application and writes a trace without trying to proceed, otherwise it would be impossible to guarantee that any trace will be written at all.
On Windows* OS, not all features of POSIX* signal handling are available. Therefore, VTfs on Windows* OS uses some heuristics and may not work as reliably as on Linux* OS. It is not possible to stop a Windows* application run and get a trace file by sending a signal or terminating the job in the Windows task manager.
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