1. Netlist > Delete Timing Netlist
2. Netlist > Create Timing Netlist
3. In the prompted property menu, append "-force_dat" to the Tcl command and click OK.
4. Read the Synopsys Design Constraints (.SDC) file and update timing netlist.
Following these steps, report timing produces the same timing report as the Quartus II software.
This problem is scheduled to be fixed in a future release of the Quartus II software.