Description
Due to a problem in the Intel® Quartus® Prime Pro Edition Software, you may see this warning message when the INIT_DONE signal is enabled on the SDM_IO pin, which also has an MSEL0 pin assigned to it. This warning message can be ignored. INIT_DONE, MSEL pins are implemented correctly in the design.
Resolution
This warning message exists for all configuration pins (not user pins) that are created by the tool for device families.