No, it is not possible to dynamically enable or disable Global Clock (GCLK) or Regional clock (RCLK) networks that drive fPLLs in Stratix® V, Arria® V, or Cyclone® V devices.
However, due to a problem in the Quartus® II software version 13.1 and earlier, if you use the enable signal on a clock control block that drives an fPLL, compilation will not fail.
Future versions of the Quartus II software are scheduled to generate an error/warning message when you use the enable signal on a clock control block that drives an fPLL,