Description
Due to a bug in the simulation model, the ATX PLL REFCLK switching does not work when using the Stratix® V GX Custom or Low Latency PHY in Quartus® II Software version 12.0.
Resolution
To work around this issue, you can temporarily select the CMU PLL in the PHY MegaWizard™ to simulate REFCLK switching.
This issue will be fixed in a future version of Quartus.