Description
Due to a problem in Quartus Prime while generating JAM file, erasing CFM0 alone without erasing CFM1 & vice versa does not erase successfully in hardware even though software shows it is successful.
Resolution
As a workaround for 16.0, you can generate the JAM files with the ini
"PGM_MAX10_POF_SPEEDMODE = off". This issue is fixed in 16.1.