Why does Retrain Link with Perform Equalization bit set to 1 cause the Intel® Arria® 10 Gen3 PCIe* Root Port to down train to Gen1 speed?

Retraining an Intel® Arria® 10 Gen3 PCIe* Root Port link with Perform Equalization bit (Link Control 3 register 0x304 bit[0]) and Retrain Link bit (Link Control and Status register 0x90 bit[5]) set to 1 may cause the Gen3 link to down train to Gen1 speed. Unlike the Retrain Link bit, the Perform Equalization bit does not get cleared automatically after it is set to 1 , causing the LTSSM to continuously enter the Equalization state and time out.

To work around this problem, clear the Perform Equalization bit to 0 during the Equalization Phase 3 (ltssmstate: 0x1E) before timeout(24ms) occurs.This problem will not be fixed in a future release of the Intel® Quartus® Prime software.