To enable the Disable EPCS ID check option when using the quartus_cpf command, you need to add the following line to a quartus.ini file in your project directory or the Quartus® II software bin directory.
PGMIO_IGNORE_EPCS_ID_CHECK=1
Then create your programming file using the quartus_cpf command with a Conversion Setup File (.cof) file.
If you do not have an existing quartus.ini file, you can create a text file named quartus.ini in the same location as your Quartus II Project File (.qpf) or <Quartus II install directory>/quartus/bin directory.