Critical Issue
The Fitter sometimes does not honor GLOBAL signal
assignments applied by the <variation name>_pin_assignments.tcl script.
To determine whether the Quartus II software properly applies GLOBAL assignments, check
the Fitter Report and verify whether any GLOBAL signal
assignment referring to a PLL output port (for example, ...|auto_generated|clk[*])
appear in the Ignored Assignments section.If there
is a GLOBAL assignment to a PLL output port listed
in Ignored Assignments, you can correct the problem
by running Analysis and Synthesis and then running the Fitter. You
should then verify in the Fitter Report that the assignment is no
longer ignored.