Altera® provides Schematic Review Worksheets to assist you in reviewing your schematics targeting the Arria® GX, Arria II GX, Cyclone® III, Stratix® II, Stratix II GX, Stratix III, Stratix IV GX, and Stratix IV E device families. The Worksheets allow you to add comments to track deviations from Altera's guidelines.
The worksheets are based off of the respective device Pin Connection Guidelines and other referenced Altera literature applicable to board level pin connections that need to be considered when you create your schematic.
The worksheets can be downloaded from Device Schematic Review Worksheets.