Modify the following always block starting at ~ line 340 in the file altpciexpav128_cr_avalon.v to add the item in bold to the sensitivity list:
// Select the returned read data and read valid
always @(addr_decode_reg or AdTrReadData_i or AdTrReadDataVld_i or
A2PMbReadData_i or A2PMbReadDataVld_i or
P2AMbReadData_i or P2AMbReadDataVld_i or
RuptReadData_i or RuptReadDataVld_i or
RpReadData_i or RpReadDataVld_i or
RdBakReadData_i or RdBakReadDataVld_i or CfgReadDataVld_i)
This problem is scheduled to be fixed in a future release of the Quartus® II software.