Replication Recipe for HaplotypeCaller Tool Runtimes

Replication Recipe for HaplotypeCaller Tool Runtimes

Replication Recipe for HaplotypeCaller Tool Runtimes

GATK 3.2 and above Details 1 The runtimes of the HaplotypeCaller tool in GATK v3.2 for the input NA12878 from the 1000 Genomes Project are listed in Table 1. This input has an average coverage for the GATK dataset of 47x, whole genome. The majority of the program is written in Java*. The kernel of the program, called PairHMM, is implemented in C++ and is accelerated using

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